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Species belonging to selected taxon:

Fragaria vesca



ABOUT THIS RECORD

ID: MNEST000699
species: Fragaria vesca
miRNA family: MIR2025
source: miRNEST

Taxonomy by NCBI:
Fragaria vesca Fragaria Potentilleae Rosodae Rosoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GTGTTCTCAGGTCGCCCCTGC

miRNA*
GGAGCGACCTGAGACCACAT

mismatches: 3
bulges: 0

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pre-miRNA
AGCCAGCCACAAAGGGTAGAGGAGTCCCTGAGGAGCGACCTGAGACCACATGTGTGCACCCTCACCACACTCCAAAGTGAGAGTACATAACCACGTGTTC
TCAGGTCGCCCCTGC
GAGACTTTCCGTTTACCACATAACCGCG


dot-bracket secondary structure
.....((.......((((((((((((..(((((.(((((((((((.(((.((((((.((.(((((...........))))).)).))))..)).))).))
))))))))).))).)
).)))..))).))))))........)).



SIMILARITIES
miRBase osa-MIR398b: 0.0001

PMRD vvi-miR398c: 0.0001

microPC miR398: 3e-42
UniProt no hits

RFAM no hits
most similar mature miRNAs

Identical with: miR398 from microPC (MNEST045087)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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